Not that you're wrong but researchers are also deeply imperfect. They're rushed, they're given no time to actually improve their work, and the emphasis is entirely on 'good-enough' publications. The number of times I've been involved in a paper where the mentality wasn't "get it out the door, now" is.... zero times.
Plots often fail to clarify for the precise reason that clarification takes time and effort and those things are lacking in academia in spades. Are people intentionally hiding ugly details, definitely on occasion? But I don't think it's the primary source of such bad figures.
On the one hand, this all seems pretty great.
On the other hand, I think a lot of these "bad graphs" are very intentionally chosen precisely in order to hide the small number of data points, or an underlying distribution that looks suspicious, etc.
So it's not so much "friends don't let friends", but more "when you see a graph that chooses to obfuscate rather than clarify, suspect it might be intentional".